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Alphafold on Firefly
A singularity container image is available for using Alphafold on the Firefly cluster.
Instructions and required files can be found at this link: ARCCA GitHub fork of Alphafold
For quick testing, follow the steps:
- Login in to Firefly compute node (as the head node doesn't have GPU)
$ ssh firefly
$ ssh firefly01
- Copy the example scripts directory into your working directory
$ cp /opt/ohpc/pub/singularity/test-scripts/alphafold-2 . -R
- Run alphafold on test sequence T1050.fasta
$ cd alphafold-2
$ bash alphafold-singularity-run.sh --fasta_paths T1050.fasta